Index

A

aa_length (bvbrc.GenomeFeatureClient attribute) aa_sequence_md5 (bvbrc.GenomeFeatureClient attribute) (bvbrc.ProteinFeatureClient attribute) (bvbrc.SequenceFeatureClient attribute) aa_variant (bvbrc.SequenceFeatureClient attribute) (bvbrc.SpikeVariantClient attribute) accession (bvbrc.GenomeFeatureClient attribute) (bvbrc.GenomeSequenceClient attribute) (bvbrc.PathwayClient attribute) active (bvbrc.SubsystemClient attribute) additional_data (bvbrc.BiosetClient attribute) (bvbrc.ExperimentClient attribute) additional_metadata (bvbrc.BiosetClient attribute) (bvbrc.ExperimentClient attribute) (bvbrc.GenomeClient attribute) (bvbrc.SequenceFeatureClient attribute) (bvbrc.SequenceFeatureVtClient attribute) (bvbrc.SerologyClient attribute) (bvbrc.SurveillanceClient attribute) alcohol_or_other_drug_dependence (bvbrc.SurveillanceClient attribute) alignments (bvbrc.ProteinStructureClient attribute) all_results_received (bvbrc.BVBRCResponse property) alt_locus_tag (bvbrc.GenomeFeatureClient attribute) (bvbrc.PathwayClient attribute) (bvbrc.SpGeneClient attribute) altitude (bvbrc.GenomeClient attribute) analysis_group_1 (bvbrc.BiosetClient attribute) analysis_group_2 (bvbrc.BiosetClient attribute)

analysis_method (bvbrc.BiosetClient attribute) annotation (bvbrc.GenomeFeatureClient attribute) (bvbrc.PathwayClient attribute) antibiotic (bvbrc.GenomeAmrClient attribute) antibiotic_name (bvbrc.AntibioticsClient attribute) antibiotics (bvbrc.SpGeneClient attribute) (bvbrc.SpGeneRefClient attribute) antibiotics_class (bvbrc.SpGeneClient attribute) (bvbrc.SpGeneRefClient attribute) AntibioticsClient (class in bvbrc) antimicrobial_resistance (bvbrc.GenomeClient attribute) antimicrobial_resistance_evidence (bvbrc.GenomeClient attribute) apparent_encoding (bvbrc.BVBRCResponse property) assay_group (bvbrc.EpitopeAssayClient attribute) assay_id (bvbrc.EpitopeAssayClient attribute) assay_measurement (bvbrc.EpitopeAssayClient attribute) assay_measurement_unit (bvbrc.EpitopeAssayClient attribute) assay_method (bvbrc.EpitopeAssayClient attribute) assay_result (bvbrc.EpitopeAssayClient attribute) assay_results (bvbrc.EpitopeClient attribute) assay_type (bvbrc.EpitopeAssayClient attribute) assembly_accession (bvbrc.GenomeClient attribute) assembly_method (bvbrc.GenomeClient attribute) assertion (bvbrc.SpGeneRefClient attribute) atc_classification (bvbrc.AntibioticsClient attribute) authors (bvbrc.EpitopeAssayClient attribute) (bvbrc.GenomeClient attribute) (bvbrc.ProteinStructureClient attribute)

B

bcell_assays (bvbrc.EpitopeClient attribute) bioproject_accession (bvbrc.GenomeClient attribute) biosample_accession (bvbrc.GenomeClient attribute) bioset_criteria (bvbrc.BiosetClient attribute) bioset_description (bvbrc.BiosetClient attribute) (bvbrc.BiosetResultClient attribute) bioset_id (bvbrc.BiosetClient attribute) (bvbrc.BiosetResultClient attribute) bioset_name (bvbrc.BiosetClient attribute) (bvbrc.BiosetResultClient attribute) bioset_result (bvbrc.BiosetClient attribute) bioset_type (bvbrc.BiosetClient attribute) (bvbrc.BiosetResultClient attribute)

BiosetClient (class in bvbrc) BiosetResultClient (class in bvbrc) biosets (bvbrc.ExperimentClient attribute) biovar (bvbrc.GenomeClient attribute) body_sample_site (bvbrc.GenomeClient attribute) body_sample_subsite (bvbrc.GenomeClient attribute) brc_id (bvbrc.GenomeFeatureClient attribute) breastfeeding (bvbrc.SurveillanceClient attribute) build() (bvbrc.RQL.RQLQuery class method) bvbrc.RQL module BVBRCResponse (class in bvbrc)

C

canonical_smiles (bvbrc.AntibioticsClient attribute) cas_id (bvbrc.AntibioticsClient attribute) category (bvbrc.PPIClient attribute) cds (bvbrc.GenomeClient attribute) cds_mean (bvbrc.TaxonomyClient attribute) cds_ratio (bvbrc.GenomeClient attribute) cds_sd (bvbrc.TaxonomyClient attribute) cell_shape (bvbrc.GenomeClient attribute) checkm_completeness (bvbrc.GenomeClient attribute) checkm_contamination (bvbrc.GenomeClient attribute) chest_imaging_interpretation (bvbrc.SurveillanceClient attribute) chromosome (bvbrc.GenomeSequenceClient attribute) chromosomes (bvbrc.GenomeClient attribute) chronic_conditions (bvbrc.SurveillanceClient attribute) city (bvbrc.GenomeClient attribute) clade (bvbrc.GenomeClient attribute) class_ (bvbrc.GenomeClient attribute) (bvbrc.SubsystemClient attribute) (bvbrc.SubsystemRefClient attribute) classification (bvbrc.ProteinFeatureClient attribute) (bvbrc.SpGeneClient attribute) (bvbrc.SpGeneRefClient attribute) classifier_round (bvbrc.GenomeFeatureClient attribute) classifier_score (bvbrc.GenomeFeatureClient attribute) Client (class in bvbrc) close() (bvbrc.BVBRCResponse method) coarse_consistency (bvbrc.GenomeClient attribute) codon_start (bvbrc.GenomeFeatureClient attribute) collection_city (bvbrc.SerologyClient attribute) (bvbrc.SurveillanceClient attribute) collection_country (bvbrc.SerologyClient attribute) (bvbrc.SurveillanceClient attribute) collection_date (bvbrc.GenomeClient attribute) (bvbrc.SerologyClient attribute) (bvbrc.StrainClient attribute) (bvbrc.SurveillanceClient attribute) collection_latitude (bvbrc.SurveillanceClient attribute) collection_longitude (bvbrc.SurveillanceClient attribute) collection_poi (bvbrc.SurveillanceClient attribute) collection_season (bvbrc.SurveillanceClient attribute)

collection_state (bvbrc.SerologyClient attribute) collection_state_province (bvbrc.SurveillanceClient attribute) collection_year (bvbrc.GenomeClient attribute) (bvbrc.SerologyClient attribute) (bvbrc.StrainClient attribute) (bvbrc.SurveillanceClient attribute) collector_institution (bvbrc.SurveillanceClient attribute) collector_name (bvbrc.SurveillanceClient attribute) comment (bvbrc.StructuredAssertionClient attribute) comments (bvbrc.EpitopeClient attribute) (bvbrc.GenomeClient attribute) (bvbrc.ProteinFeatureClient attribute) (bvbrc.SequenceFeatureClient attribute) (bvbrc.SequenceFeatureVtClient attribute) (bvbrc.SerologyClient attribute) (bvbrc.SurveillanceClient attribute) common_name (bvbrc.GenomeClient attribute) completion_date (bvbrc.GenomeClient attribute) computational_method (bvbrc.GenomeAmrClient attribute) computational_method_performance (bvbrc.GenomeAmrClient attribute) computational_method_version (bvbrc.GenomeAmrClient attribute) contact_email_address (bvbrc.SurveillanceClient attribute) content (bvbrc.BVBRCResponse property) content_range (bvbrc.BVBRCResponse property) contig_l50 (bvbrc.GenomeClient attribute) contig_n50 (bvbrc.GenomeClient attribute) contigs (bvbrc.GenomeClient attribute) contributing_institution (bvbrc.SerologyClient attribute) (bvbrc.SurveillanceClient attribute) cookies (bvbrc.BVBRCResponse attribute) core_families (bvbrc.GenomeClient attribute) (bvbrc.TaxonomyClient attribute) core_family_ids (bvbrc.TaxonomyClient attribute) core_family_ratio (bvbrc.GenomeClient attribute) country (bvbrc.SpikeLineageClient attribute) (bvbrc.SpikeVariantClient attribute) counts (bvbrc.BiosetResultClient attribute) county (bvbrc.GenomeClient attribute) CSV (bvbrc.ReturnFormat attribute) culture_collection (bvbrc.GenomeClient attribute)

D

date_inserted (bvbrc.AntibioticsClient attribute) (bvbrc.BiosetClient attribute) (bvbrc.BiosetResultClient attribute) (bvbrc.EnzymeClassRefClient attribute) (bvbrc.EpitopeAssayClient attribute) (bvbrc.EpitopeClient attribute) (bvbrc.ExperimentClient attribute) (bvbrc.FeatureSequenceClient attribute) (bvbrc.GeneOntologyRefClient attribute) (bvbrc.GenomeAmrClient attribute) (bvbrc.GenomeClient attribute) (bvbrc.GenomeFeatureClient attribute) (bvbrc.GenomeSequenceClient attribute) (bvbrc.IdRefClient attribute) (bvbrc.MiscNiaidSgcClient attribute) (bvbrc.PathwayClient attribute) (bvbrc.PathwayRefClient attribute) (bvbrc.PPIClient attribute) (bvbrc.ProteinFamilyRefClient attribute) (bvbrc.ProteinFeatureClient attribute) (bvbrc.ProteinStructureClient attribute) (bvbrc.SequenceFeatureClient attribute) (bvbrc.SequenceFeatureVtClient attribute) (bvbrc.SerologyClient attribute) (bvbrc.SpGeneClient attribute) (bvbrc.SpGeneRefClient attribute) (bvbrc.SpikeLineageClient attribute) (bvbrc.SpikeVariantClient attribute) (bvbrc.StrainClient attribute) (bvbrc.StructuredAssertionClient attribute) (bvbrc.SubsystemClient attribute) (bvbrc.SubsystemRefClient attribute) (bvbrc.SurveillanceClient attribute) date_modified (bvbrc.AntibioticsClient attribute) (bvbrc.BiosetClient attribute) (bvbrc.BiosetResultClient attribute) (bvbrc.EnzymeClassRefClient attribute) (bvbrc.EpitopeAssayClient attribute) (bvbrc.EpitopeClient attribute) (bvbrc.ExperimentClient attribute) (bvbrc.FeatureSequenceClient attribute) (bvbrc.GeneOntologyRefClient attribute) (bvbrc.GenomeAmrClient attribute) (bvbrc.GenomeClient attribute) (bvbrc.GenomeFeatureClient attribute) (bvbrc.GenomeSequenceClient attribute) (bvbrc.IdRefClient attribute) (bvbrc.MiscNiaidSgcClient attribute) (bvbrc.PathwayClient attribute) (bvbrc.PathwayRefClient attribute) (bvbrc.PPIClient attribute) (bvbrc.ProteinFamilyRefClient attribute) (bvbrc.ProteinFeatureClient attribute) (bvbrc.ProteinStructureClient attribute) (bvbrc.SequenceFeatureClient attribute) (bvbrc.SequenceFeatureVtClient attribute) (bvbrc.SerologyClient attribute) (bvbrc.SpGeneClient attribute) (bvbrc.SpGeneRefClient attribute) (bvbrc.SpikeLineageClient attribute) (bvbrc.SpikeVariantClient attribute) (bvbrc.StrainClient attribute) (bvbrc.StructuredAssertionClient attribute) (bvbrc.SubsystemClient attribute) (bvbrc.SubsystemRefClient attribute) (bvbrc.SurveillanceClient attribute)

daycare_attendance (bvbrc.SurveillanceClient attribute) days_elapsed_to_disease_status (bvbrc.SurveillanceClient attribute) days_elapsed_to_sample_collection (bvbrc.SurveillanceClient attribute) days_elapsed_to_vaccination (bvbrc.SurveillanceClient attribute) definition (bvbrc.GeneOntologyRefClient attribute) depth (bvbrc.GenomeClient attribute) description (bvbrc.AntibioticsClient attribute) (bvbrc.GenomeSequenceClient attribute) (bvbrc.ProteinFeatureClient attribute) (bvbrc.SubsystemRefClient attribute) (bvbrc.TaxonomyClient attribute) detection_instrument (bvbrc.ExperimentClient attribute) detection_method (bvbrc.PPIClient attribute) diagnosis (bvbrc.SurveillanceClient attribute) dialysis (bvbrc.SurveillanceClient attribute) disease (bvbrc.GenomeClient attribute) disease_severity (bvbrc.SurveillanceClient attribute) disease_status (bvbrc.SurveillanceClient attribute) division (bvbrc.TaxonomyClient attribute) DNA_FASTA (bvbrc.ReturnFormat attribute) DNA_JSONH_FASTA (bvbrc.ReturnFormat attribute) doi (bvbrc.ExperimentClient attribute) domain_a (bvbrc.PPIClient attribute) domain_b (bvbrc.PPIClient attribute) drugbank_interactions (bvbrc.AntibioticsClient attribute) duration_of_exposure (bvbrc.SurveillanceClient attribute) duration_of_treatment (bvbrc.SurveillanceClient attribute)

E

e_value (bvbrc.ProteinFeatureClient attribute) (bvbrc.SpGeneClient attribute) ec_description (bvbrc.EnzymeClassRefClient attribute) (bvbrc.PathwayClient attribute) (bvbrc.PathwayRefClient attribute) ec_number (bvbrc.EnzymeClassRefClient attribute) (bvbrc.PathwayClient attribute) (bvbrc.PathwayRefClient attribute) ecmo (bvbrc.SurveillanceClient attribute) education (bvbrc.SurveillanceClient attribute) elapsed (bvbrc.BVBRCResponse attribute) embargo_end_date (bvbrc.SurveillanceClient attribute) encoding (bvbrc.BVBRCResponse attribute) end (bvbrc.EpitopeAssayClient attribute) (bvbrc.EpitopeClient attribute) (bvbrc.GenomeFeatureClient attribute) (bvbrc.ProteinFeatureClient attribute) (bvbrc.SequenceFeatureClient attribute) entity_count (bvbrc.BiosetClient attribute) entity_id (bvbrc.BiosetResultClient attribute) entity_name (bvbrc.BiosetResultClient attribute) entity_type (bvbrc.BiosetClient attribute) (bvbrc.BiosetResultClient attribute) EnzymeClassRefClient (class in bvbrc) epitope_id (bvbrc.EpitopeAssayClient attribute) (bvbrc.EpitopeClient attribute) epitope_sequence (bvbrc.EpitopeAssayClient attribute) (bvbrc.EpitopeClient attribute) epitope_type (bvbrc.EpitopeAssayClient attribute) (bvbrc.EpitopeClient attribute)

EpitopeAssayClient (class in bvbrc) EpitopeClient (class in bvbrc) evidence (bvbrc.GenomeAmrClient attribute) (bvbrc.PPIClient attribute) (bvbrc.ProteinFeatureClient attribute) (bvbrc.SpGeneClient attribute) evidence_code (bvbrc.SequenceFeatureClient attribute) (bvbrc.StructuredAssertionClient attribute) EXCEL (bvbrc.ReturnFormat attribute) exp_description (bvbrc.ExperimentClient attribute) exp_id (bvbrc.BiosetClient attribute) (bvbrc.BiosetResultClient attribute) (bvbrc.ExperimentClient attribute) exp_name (bvbrc.BiosetClient attribute) (bvbrc.BiosetResultClient attribute) (bvbrc.ExperimentClient attribute) exp_poc (bvbrc.ExperimentClient attribute) exp_protocol (bvbrc.ExperimentClient attribute) exp_title (bvbrc.BiosetClient attribute) (bvbrc.BiosetResultClient attribute) (bvbrc.ExperimentClient attribute) exp_type (bvbrc.BiosetClient attribute) (bvbrc.BiosetResultClient attribute) (bvbrc.ExperimentClient attribute) ExperimentClient (class in bvbrc) experimenters (bvbrc.ExperimentClient attribute) exposure (bvbrc.SurveillanceClient attribute) exposure_type (bvbrc.SurveillanceClient attribute) expression (bvbrc.RQL.RQLQuery property) extract() (bvbrc.ReturnFormat static method)

F

family (bvbrc.GenomeClient attribute) (bvbrc.StrainClient attribute) family_id (bvbrc.ProteinFamilyRefClient attribute) family_product (bvbrc.ProteinFamilyRefClient attribute) family_type (bvbrc.ProteinFamilyRefClient attribute) feature_id (bvbrc.BiosetResultClient attribute) (bvbrc.GenomeFeatureClient attribute) (bvbrc.PathwayClient attribute) (bvbrc.ProteinFeatureClient attribute) (bvbrc.ProteinStructureClient attribute) (bvbrc.SequenceFeatureClient attribute) (bvbrc.SpGeneClient attribute) (bvbrc.StructuredAssertionClient attribute) (bvbrc.SubsystemClient attribute)

feature_id_a (bvbrc.PPIClient attribute) feature_id_b (bvbrc.PPIClient attribute) feature_type (bvbrc.GenomeFeatureClient attribute) (bvbrc.ProteinFeatureClient attribute) FeatureSequenceClient (class in bvbrc) Field (class in bvbrc.RQL) figfam_id (bvbrc.GenomeFeatureClient attribute) file_path (bvbrc.ProteinStructureClient attribute) filter() (bvbrc.RQL.RQLQuery method) fine_consistency (bvbrc.GenomeClient attribute) fld() (in module bvbrc) fpkm (bvbrc.BiosetResultClient attribute) from_response() (bvbrc.BVBRCResponse class method) function (bvbrc.SpGeneClient attribute) (bvbrc.SpGeneRefClient attribute)

G

gc_content (bvbrc.GenomeClient attribute) (bvbrc.GenomeSequenceClient attribute) genbank_accession (bvbrc.SequenceFeatureClient attribute) (bvbrc.SerologyClient attribute) genbank_accessions (bvbrc.GenomeClient attribute) (bvbrc.StrainClient attribute) gene (bvbrc.BiosetResultClient attribute) (bvbrc.GenomeFeatureClient attribute) (bvbrc.PathwayClient attribute) (bvbrc.ProteinFeatureClient attribute) (bvbrc.ProteinStructureClient attribute) (bvbrc.SequenceFeatureClient attribute) (bvbrc.SpGeneClient attribute) (bvbrc.SubsystemClient attribute) gene_a (bvbrc.PPIClient attribute) gene_b (bvbrc.PPIClient attribute) gene_id (bvbrc.BiosetResultClient attribute) (bvbrc.GenomeFeatureClient attribute) (bvbrc.SpGeneRefClient attribute) gene_name (bvbrc.SpGeneRefClient attribute) gene_symbol_collection (bvbrc.MiscNiaidSgcClient attribute) GeneOntologyRefClient (class in bvbrc) genetic_code (bvbrc.TaxonomyClient attribute) genome_count (bvbrc.TaxonomyClient attribute) genome_ec (bvbrc.PathwayClient attribute) genome_id (bvbrc.BiosetClient attribute) (bvbrc.BiosetResultClient attribute) (bvbrc.ExperimentClient attribute) (bvbrc.GenomeAmrClient attribute) (bvbrc.GenomeClient attribute) (bvbrc.GenomeFeatureClient attribute) (bvbrc.GenomeSequenceClient attribute) (bvbrc.PathwayClient attribute) (bvbrc.ProteinFeatureClient attribute) (bvbrc.ProteinStructureClient attribute) (bvbrc.SequenceFeatureClient attribute) (bvbrc.SpGeneClient attribute) (bvbrc.SubsystemClient attribute) (bvbrc.SurveillanceClient attribute) genome_id_a (bvbrc.PPIClient attribute) genome_id_b (bvbrc.PPIClient attribute) genome_ids (bvbrc.StrainClient attribute) genome_length (bvbrc.GenomeClient attribute) genome_length_mean (bvbrc.TaxonomyClient attribute) genome_length_sd (bvbrc.TaxonomyClient attribute) genome_name (bvbrc.GenomeAmrClient attribute) (bvbrc.GenomeClient attribute) (bvbrc.GenomeFeatureClient attribute) (bvbrc.GenomeSequenceClient attribute) (bvbrc.PathwayClient attribute) (bvbrc.ProteinFeatureClient attribute) (bvbrc.SequenceFeatureClient attribute) (bvbrc.SpGeneClient attribute) (bvbrc.SubsystemClient attribute) genome_name_a (bvbrc.PPIClient attribute) genome_name_b (bvbrc.PPIClient attribute) genome_quality (bvbrc.GenomeClient attribute) genome_quality_flags (bvbrc.GenomeClient attribute) genome_status (bvbrc.GenomeClient attribute)

GenomeAmrClient (class in bvbrc) GenomeClient (class in bvbrc) GenomeFeatureClient (class in bvbrc) genomes (bvbrc.TaxonomyClient attribute) genomes_f (bvbrc.TaxonomyClient attribute) GenomeSequenceClient (class in bvbrc) genus (bvbrc.GenomeClient attribute) (bvbrc.MiscNiaidSgcClient attribute) (bvbrc.SpGeneRefClient attribute) (bvbrc.StrainClient attribute) geographic_group (bvbrc.GenomeClient attribute) (bvbrc.SerologyClient attribute) (bvbrc.StrainClient attribute) (bvbrc.SurveillanceClient attribute) geographic_location (bvbrc.GenomeClient attribute) get() (bvbrc.AntibioticsClient method) (bvbrc.BiosetClient method) (bvbrc.BiosetResultClient method) (bvbrc.Client method) (bvbrc.EnzymeClassRefClient method) (bvbrc.EpitopeAssayClient method) (bvbrc.EpitopeClient method) (bvbrc.ExperimentClient method) (bvbrc.FeatureSequenceClient method) (bvbrc.GeneOntologyRefClient method) (bvbrc.GenomeAmrClient method) (bvbrc.GenomeClient method) (bvbrc.GenomeFeatureClient method) (bvbrc.GenomeSequenceClient method) (bvbrc.IdRefClient method) (bvbrc.MiscNiaidSgcClient method) (bvbrc.PathwayClient method) (bvbrc.PathwayRefClient method) (bvbrc.PPIClient method) (bvbrc.ProteinFamilyRefClient method) (bvbrc.ProteinFeatureClient method) (bvbrc.ProteinStructureClient method) (bvbrc.SequenceFeatureClient method) (bvbrc.SequenceFeatureVtClient method) (bvbrc.SerologyClient method) (bvbrc.SpGeneClient method) (bvbrc.SpGeneRefClient method) (bvbrc.SpikeLineageClient method) (bvbrc.SpikeVariantClient method) (bvbrc.StrainClient method) (bvbrc.StructuredAssertionClient method) (bvbrc.SubsystemClient method) (bvbrc.SubsystemRefClient method) (bvbrc.SurveillanceClient method) (bvbrc.TaxonomyClient method) GFF (bvbrc.ReturnFormat attribute) gi (bvbrc.GenomeSequenceClient attribute) (bvbrc.SpGeneRefClient attribute) go (bvbrc.EnzymeClassRefClient attribute) (bvbrc.GenomeFeatureClient attribute) go_id (bvbrc.GeneOntologyRefClient attribute) go_name (bvbrc.GeneOntologyRefClient attribute) gram_stain (bvbrc.GenomeClient attribute) growth_rate (bvbrc.SpikeLineageClient attribute) (bvbrc.SpikeVariantClient attribute)

H

h1_clade_global (bvbrc.GenomeClient attribute) h1_clade_us (bvbrc.GenomeClient attribute) h3_clade (bvbrc.GenomeClient attribute) h5_clade (bvbrc.GenomeClient attribute) h_type (bvbrc.GenomeClient attribute) (bvbrc.StrainClient attribute) habitat (bvbrc.GenomeClient attribute) has_clones (bvbrc.MiscNiaidSgcClient attribute) has_proteins (bvbrc.MiscNiaidSgcClient attribute) headers (bvbrc.BVBRCResponse attribute) history (bvbrc.BVBRCResponse attribute) hospitalization_duration (bvbrc.SurveillanceClient attribute) hospitalized (bvbrc.SurveillanceClient attribute) host_age (bvbrc.GenomeClient attribute) (bvbrc.SerologyClient attribute) (bvbrc.SurveillanceClient attribute) host_age_group (bvbrc.SerologyClient attribute) host_capture_status (bvbrc.SurveillanceClient attribute) host_common_name (bvbrc.GenomeClient attribute) (bvbrc.SerologyClient attribute) (bvbrc.StrainClient attribute) (bvbrc.SurveillanceClient attribute) host_ethnicity (bvbrc.SurveillanceClient attribute) host_gender (bvbrc.GenomeClient attribute) host_group (bvbrc.GenomeClient attribute) (bvbrc.StrainClient attribute) (bvbrc.SurveillanceClient attribute)

host_habitat (bvbrc.SurveillanceClient attribute) host_health (bvbrc.GenomeClient attribute) (bvbrc.SerologyClient attribute) (bvbrc.SurveillanceClient attribute) host_height (bvbrc.SurveillanceClient attribute) host_id_type (bvbrc.SurveillanceClient attribute) host_identifier (bvbrc.SerologyClient attribute) (bvbrc.SurveillanceClient attribute) host_name (bvbrc.EpitopeAssayClient attribute) (bvbrc.EpitopeClient attribute) (bvbrc.GenomeClient attribute) (bvbrc.StrainClient attribute) host_natural_state (bvbrc.SurveillanceClient attribute) host_race (bvbrc.SurveillanceClient attribute) host_scientific_name (bvbrc.GenomeClient attribute) host_sex (bvbrc.SerologyClient attribute) (bvbrc.SurveillanceClient attribute) host_species (bvbrc.SerologyClient attribute) (bvbrc.SurveillanceClient attribute) host_taxon_id (bvbrc.EpitopeAssayClient attribute) host_type (bvbrc.SerologyClient attribute) host_weight (bvbrc.SurveillanceClient attribute) human_leukocyte_antigens (bvbrc.SurveillanceClient attribute) hypothetical_cds (bvbrc.GenomeClient attribute) hypothetical_cds_ratio (bvbrc.GenomeClient attribute) hypothetical_cds_ratio_mean (bvbrc.TaxonomyClient attribute) hypothetical_cds_ratio_sd (bvbrc.TaxonomyClient attribute)

I

id (bvbrc.BiosetResultClient attribute) (bvbrc.GenomeAmrClient attribute) (bvbrc.IdRefClient attribute) (bvbrc.PathwayClient attribute) (bvbrc.PathwayRefClient attribute) (bvbrc.PPIClient attribute) (bvbrc.ProteinFeatureClient attribute) (bvbrc.SequenceFeatureClient attribute) (bvbrc.SequenceFeatureVtClient attribute) (bvbrc.SerologyClient attribute) (bvbrc.SpGeneClient attribute) (bvbrc.SpGeneRefClient attribute) (bvbrc.SpikeLineageClient attribute) (bvbrc.SpikeVariantClient attribute) (bvbrc.StrainClient attribute) (bvbrc.StructuredAssertionClient attribute) (bvbrc.SubsystemClient attribute) (bvbrc.SubsystemRefClient attribute) (bvbrc.SurveillanceClient attribute) id_type (bvbrc.IdRefClient attribute) id_value (bvbrc.IdRefClient attribute) identity (bvbrc.SpGeneClient attribute) IdRefClient (class in bvbrc) inchi_key (bvbrc.AntibioticsClient attribute)

infections_within_five_years (bvbrc.SurveillanceClient attribute) influenza_like_illness_over_the_past_year (bvbrc.SurveillanceClient attribute) initiation_of_treatment (bvbrc.SurveillanceClient attribute) institution (bvbrc.ProteinStructureClient attribute) intensive_care_unit (bvbrc.SurveillanceClient attribute) interaction_type (bvbrc.PPIClient attribute) interactor_a (bvbrc.PPIClient attribute) interactor_b (bvbrc.PPIClient attribute) interactor_desc_a (bvbrc.PPIClient attribute) interactor_desc_b (bvbrc.PPIClient attribute) interactor_type_a (bvbrc.PPIClient attribute) interactor_type_b (bvbrc.PPIClient attribute) interpro_description (bvbrc.ProteinFeatureClient attribute) interpro_id (bvbrc.ProteinFeatureClient attribute) is_permanent_redirect (bvbrc.BVBRCResponse property) is_redirect (bvbrc.BVBRCResponse property) isin() (bvbrc.RQL.Field method) isolation_comments (bvbrc.GenomeClient attribute) isolation_country (bvbrc.GenomeClient attribute) (bvbrc.StrainClient attribute) isolation_site (bvbrc.GenomeClient attribute) isolation_source (bvbrc.GenomeClient attribute) isomeric_smiles (bvbrc.AntibioticsClient attribute) iter_content() (bvbrc.BVBRCResponse method) iter_lines() (bvbrc.BVBRCResponse method)

J

JSON (bvbrc.ReturnFormat attribute)

json() (bvbrc.BVBRCResponse method)

K

keyword() (in module bvbrc) (in module bvbrc.RQL)

kingdom (bvbrc.GenomeClient attribute)

L

l (bvbrc.StrainClient attribute) lab_host (bvbrc.GenomeClient attribute) (bvbrc.StrainClient attribute) laboratory_typing_method (bvbrc.GenomeAmrClient attribute) laboratory_typing_method_version (bvbrc.GenomeAmrClient attribute) laboratory_typing_platform (bvbrc.GenomeAmrClient attribute) last_update_date (bvbrc.SurveillanceClient attribute) latitude (bvbrc.GenomeClient attribute) length (bvbrc.GenomeSequenceClient attribute) (bvbrc.ProteinFeatureClient attribute) (bvbrc.SequenceFeatureClient attribute) limit() (bvbrc.RQL.RQLQuery method) lineage (bvbrc.GenomeClient attribute) (bvbrc.SpikeLineageClient attribute) (bvbrc.TaxonomyClient attribute)

lineage_count (bvbrc.SpikeLineageClient attribute) (bvbrc.SpikeVariantClient attribute) lineage_ids (bvbrc.TaxonomyClient attribute) lineage_names (bvbrc.TaxonomyClient attribute) lineage_of_concern (bvbrc.SpikeLineageClient attribute) lineage_ranks (bvbrc.TaxonomyClient attribute) links (bvbrc.BVBRCResponse property) location (bvbrc.GenomeFeatureClient attribute) locus_tag (bvbrc.BiosetResultClient attribute) (bvbrc.SpGeneRefClient attribute) log2_fc (bvbrc.BiosetResultClient attribute) longitude (bvbrc.GenomeClient attribute) longitudinal_study (bvbrc.SurveillanceClient attribute)

M

m (bvbrc.StrainClient attribute) maintenance_medication (bvbrc.SurveillanceClient attribute) map_location (bvbrc.PathwayRefClient attribute) map_name (bvbrc.PathwayRefClient attribute) map_type (bvbrc.PathwayRefClient attribute) mat_peptide (bvbrc.GenomeClient attribute) MAX_RESULTS (in module bvbrc.RQL) md5 (bvbrc.FeatureSequenceClient attribute) measurement (bvbrc.GenomeAmrClient attribute) measurement_sign (bvbrc.GenomeAmrClient attribute) measurement_technique (bvbrc.ExperimentClient attribute) measurement_unit (bvbrc.GenomeAmrClient attribute) measurement_value (bvbrc.GenomeAmrClient attribute) mechanism_of_action (bvbrc.AntibioticsClient attribute)

method (bvbrc.ProteinStructureClient attribute) mhc_allele (bvbrc.EpitopeAssayClient attribute) mhc_allele_class (bvbrc.EpitopeAssayClient attribute) mhc_assays (bvbrc.EpitopeClient attribute) MiscNiaidSgcClient (class in bvbrc) missing_core_family_ids (bvbrc.GenomeClient attribute) mlst (bvbrc.GenomeClient attribute) module bvbrc.RQL mol_type (bvbrc.GenomeSequenceClient attribute) molecular_formula (bvbrc.AntibioticsClient attribute) molecular_weight (bvbrc.AntibioticsClient attribute) month (bvbrc.SpikeLineageClient attribute) (bvbrc.SpikeVariantClient attribute) motility (bvbrc.GenomeClient attribute)

N

n_type (bvbrc.GenomeClient attribute) (bvbrc.StrainClient attribute) na_length (bvbrc.GenomeFeatureClient attribute) na_sequence_md5 (bvbrc.GenomeFeatureClient attribute) ncbi_project_id (bvbrc.GenomeClient attribute)

nearest_genomes (bvbrc.GenomeClient attribute) next (bvbrc.BVBRCResponse property) no_limit (bvbrc.RQL.RQLQuery property) notes (bvbrc.GenomeFeatureClient attribute) (bvbrc.SubsystemRefClient attribute) nursing_home_residence (bvbrc.SurveillanceClient attribute)

O

occurrence (bvbrc.PathwayRefClient attribute) og_id (bvbrc.GenomeFeatureClient attribute) ok (bvbrc.BVBRCResponse property) onset_hours (bvbrc.SurveillanceClient attribute) ontology (bvbrc.GeneOntologyRefClient attribute) optimal_temperature (bvbrc.GenomeClient attribute) order (bvbrc.GenomeClient attribute) organism (bvbrc.BiosetClient attribute) (bvbrc.BiosetResultClient attribute) (bvbrc.EpitopeAssayClient attribute) (bvbrc.EpitopeClient attribute) (bvbrc.ExperimentClient attribute) (bvbrc.SpGeneClient attribute) (bvbrc.SpGeneRefClient attribute) organism_name (bvbrc.GenomeClient attribute) (bvbrc.ProteinStructureClient attribute) other_clinical (bvbrc.GenomeClient attribute) other_environmental (bvbrc.GenomeClient attribute)

other_ids (bvbrc.BiosetResultClient attribute) other_names (bvbrc.GenomeClient attribute) (bvbrc.TaxonomyClient attribute) other_segments (bvbrc.StrainClient attribute) other_typing (bvbrc.GenomeClient attribute) other_vaccinations (bvbrc.SurveillanceClient attribute) other_value (bvbrc.BiosetResultClient attribute) outgroup_genomes (bvbrc.GenomeClient attribute) owner (bvbrc.GenomeAmrClient attribute) (bvbrc.GenomeClient attribute) (bvbrc.GenomeFeatureClient attribute) (bvbrc.GenomeSequenceClient attribute) (bvbrc.PathwayClient attribute) (bvbrc.SpGeneClient attribute) (bvbrc.StrainClient attribute) (bvbrc.StructuredAssertionClient attribute) (bvbrc.SubsystemClient attribute) oxygen_requirement (bvbrc.GenomeClient attribute) oxygen_saturation (bvbrc.SurveillanceClient attribute)

P

p2_feature_id (bvbrc.GenomeFeatureClient attribute) p2_genome_id (bvbrc.GenomeClient attribute) p2_sequence_id (bvbrc.GenomeSequenceClient attribute) p_value (bvbrc.BiosetResultClient attribute) packs_per_day_for_how_many_years (bvbrc.SurveillanceClient attribute) parent_id (bvbrc.TaxonomyClient attribute) partial_cds (bvbrc.GenomeClient attribute) partial_cds_ratio (bvbrc.GenomeClient attribute) passage (bvbrc.GenomeClient attribute) (bvbrc.StrainClient attribute) pathogen_test_interpretation (bvbrc.SurveillanceClient attribute) pathogen_test_result (bvbrc.SurveillanceClient attribute) pathogen_test_type (bvbrc.SurveillanceClient attribute) pathogen_type (bvbrc.SurveillanceClient attribute) pathovar (bvbrc.GenomeClient attribute) pathway_class (bvbrc.PathwayClient attribute) (bvbrc.PathwayRefClient attribute) pathway_ec (bvbrc.PathwayClient attribute) pathway_id (bvbrc.PathwayClient attribute) (bvbrc.PathwayRefClient attribute) pathway_name (bvbrc.PathwayClient attribute) (bvbrc.PathwayRefClient attribute) PathwayClient (class in bvbrc) PathwayRefClient (class in bvbrc) patric_cds (bvbrc.GenomeClient attribute) patric_id (bvbrc.BiosetResultClient attribute) (bvbrc.GenomeFeatureClient attribute) (bvbrc.PathwayClient attribute) (bvbrc.ProteinFeatureClient attribute) (bvbrc.ProteinStructureClient attribute) (bvbrc.SequenceFeatureClient attribute) (bvbrc.SpGeneClient attribute) (bvbrc.StructuredAssertionClient attribute) (bvbrc.SubsystemClient attribute) pdb_accession (bvbrc.GenomeFeatureClient attribute) pdb_id (bvbrc.EpitopeAssayClient attribute) (bvbrc.ProteinStructureClient attribute) pgfam_id (bvbrc.GenomeFeatureClient attribute) ph1n1_like (bvbrc.GenomeClient attribute) pharmacological_classes (bvbrc.AntibioticsClient attribute) pharmacology (bvbrc.AntibioticsClient attribute) phenotype (bvbrc.GenomeClient attribute) phylum (bvbrc.GenomeClient attribute) plasmid (bvbrc.GenomeSequenceClient attribute) plasmids (bvbrc.GenomeClient attribute) plfam_cds (bvbrc.GenomeClient attribute) plfam_cds_ratio (bvbrc.GenomeClient attribute) plfam_cds_ratio_mean (bvbrc.TaxonomyClient attribute) plfam_cds_ratio_sd (bvbrc.TaxonomyClient attribute) plfam_id (bvbrc.GenomeFeatureClient attribute) pmid (bvbrc.EpitopeAssayClient attribute) (bvbrc.ExperimentClient attribute) (bvbrc.GenomeAmrClient attribute) (bvbrc.PPIClient attribute) (bvbrc.ProteinStructureClient attribute) (bvbrc.SpGeneClient attribute) (bvbrc.SpGeneRefClient attribute) (bvbrc.StructuredAssertionClient attribute) (bvbrc.SubsystemRefClient attribute)

positive_definition (bvbrc.SerologyClient attribute) post_visit_medications (bvbrc.SurveillanceClient attribute) PPIClient (class in bvbrc) pre_visit_medications (bvbrc.SurveillanceClient attribute) pregnancy (bvbrc.SurveillanceClient attribute) prevalence (bvbrc.SpikeLineageClient attribute) (bvbrc.SpikeVariantClient attribute) primary_living_situation (bvbrc.SurveillanceClient attribute) product (bvbrc.BiosetResultClient attribute) (bvbrc.GenomeFeatureClient attribute) (bvbrc.PathwayClient attribute) (bvbrc.ProteinFeatureClient attribute) (bvbrc.ProteinStructureClient attribute) (bvbrc.SequenceFeatureClient attribute) (bvbrc.SpGeneClient attribute) (bvbrc.SpGeneRefClient attribute) (bvbrc.SubsystemClient attribute) profession (bvbrc.SurveillanceClient attribute) project_identifier (bvbrc.SerologyClient attribute) (bvbrc.SurveillanceClient attribute) property (bvbrc.GenomeFeatureClient attribute) (bvbrc.SpGeneClient attribute) (bvbrc.SpGeneRefClient attribute) (bvbrc.StructuredAssertionClient attribute) property_source (bvbrc.SpGeneClient attribute) protein_accession (bvbrc.EpitopeAssayClient attribute) (bvbrc.EpitopeClient attribute) PROTEIN_FASTA (bvbrc.ReturnFormat attribute) protein_id (bvbrc.BiosetResultClient attribute) (bvbrc.EpitopeAssayClient attribute) (bvbrc.EpitopeClient attribute) (bvbrc.GenomeFeatureClient attribute) PROTEIN_JSONH_FASTA (bvbrc.ReturnFormat attribute) protein_name (bvbrc.EpitopeAssayClient attribute) (bvbrc.EpitopeClient attribute) ProteinFamilyRefClient (class in bvbrc) ProteinFeatureClient (class in bvbrc) ProteinStructureClient (class in bvbrc) protocol (bvbrc.BiosetClient attribute) pubchem_cid (bvbrc.AntibioticsClient attribute) pubchem_cid_i (bvbrc.AntibioticsClient attribute) public (bvbrc.GenomeAmrClient attribute) (bvbrc.GenomeClient attribute) (bvbrc.GenomeFeatureClient attribute) (bvbrc.GenomeSequenceClient attribute) (bvbrc.PathwayClient attribute) (bvbrc.SpGeneClient attribute) (bvbrc.StrainClient attribute) (bvbrc.StructuredAssertionClient attribute) (bvbrc.SubsystemClient attribute) public_identifier (bvbrc.ExperimentClient attribute) public_repository (bvbrc.ExperimentClient attribute) publication (bvbrc.GenomeClient attribute) (bvbrc.ProteinFeatureClient attribute) (bvbrc.SequenceFeatureClient attribute)

Q

query() (in module bvbrc)

query_coverage (bvbrc.SpGeneClient attribute)

R

raise_for_status() (bvbrc.BVBRCResponse method) raw (bvbrc.BVBRCResponse attribute) reason (bvbrc.BVBRCResponse attribute) reference_genome (bvbrc.GenomeClient attribute) refseq_accessions (bvbrc.GenomeClient attribute) refseq_cds (bvbrc.GenomeClient attribute) refseq_locus_tag (bvbrc.GenomeFeatureClient attribute) (bvbrc.PathwayClient attribute) (bvbrc.ProteinFeatureClient attribute) (bvbrc.SequenceFeatureClient attribute) (bvbrc.SpGeneClient attribute) (bvbrc.StructuredAssertionClient attribute) (bvbrc.SubsystemClient attribute) refseq_locus_tag_a (bvbrc.PPIClient attribute) refseq_locus_tag_b (bvbrc.PPIClient attribute) refseq_project_id (bvbrc.GenomeClient attribute) region (bvbrc.SpikeLineageClient attribute) (bvbrc.SpikeVariantClient attribute)

release_date (bvbrc.GenomeSequenceClient attribute) (bvbrc.ProteinStructureClient attribute) request (bvbrc.BVBRCResponse attribute) resistant_phenotype (bvbrc.GenomeAmrClient attribute) resolution (bvbrc.ProteinStructureClient attribute) result_type (bvbrc.BiosetClient attribute) (bvbrc.BiosetResultClient attribute) return_format (bvbrc.BVBRCResponse property) ReturnFormat (class in bvbrc) role_id (bvbrc.SubsystemClient attribute) (bvbrc.SubsystemRefClient attribute) role_name (bvbrc.SubsystemClient attribute) (bvbrc.SubsystemRefClient attribute) RQLExpr (class in bvbrc.RQL) RQLQuery (class in bvbrc.RQL) rrna (bvbrc.GenomeClient attribute)

S

s (bvbrc.StrainClient attribute) salinity (bvbrc.GenomeClient attribute) same_genome (bvbrc.SpGeneClient attribute) same_genus (bvbrc.SpGeneClient attribute) same_species (bvbrc.SpGeneClient attribute) sample_accession (bvbrc.SerologyClient attribute) (bvbrc.SurveillanceClient attribute) sample_identifier (bvbrc.SerologyClient attribute) (bvbrc.SurveillanceClient attribute) sample_material (bvbrc.SurveillanceClient attribute) sample_receipt_date (bvbrc.SurveillanceClient attribute) sample_transport_medium (bvbrc.SurveillanceClient attribute) samples (bvbrc.ExperimentClient attribute) score (bvbrc.PPIClient attribute) (bvbrc.ProteinFeatureClient attribute) (bvbrc.StructuredAssertionClient attribute) search() (bvbrc.AntibioticsClient method) (bvbrc.BiosetClient method) (bvbrc.BiosetResultClient method) (bvbrc.Client method) (bvbrc.EnzymeClassRefClient method) (bvbrc.EpitopeAssayClient method) (bvbrc.EpitopeClient method) (bvbrc.ExperimentClient method) (bvbrc.FeatureSequenceClient method) (bvbrc.GeneOntologyRefClient method) (bvbrc.GenomeAmrClient method) (bvbrc.GenomeClient method) (bvbrc.GenomeFeatureClient method) (bvbrc.GenomeSequenceClient method) (bvbrc.IdRefClient method) (bvbrc.MiscNiaidSgcClient method) (bvbrc.PathwayClient method) (bvbrc.PathwayRefClient method) (bvbrc.PPIClient method) (bvbrc.ProteinFamilyRefClient method) (bvbrc.ProteinFeatureClient method) (bvbrc.ProteinStructureClient method) (bvbrc.SequenceFeatureClient method) (bvbrc.SequenceFeatureVtClient method) (bvbrc.SerologyClient method) (bvbrc.SpGeneClient method) (bvbrc.SpGeneRefClient method) (bvbrc.SpikeLineageClient method) (bvbrc.SpikeVariantClient method) (bvbrc.StrainClient method) (bvbrc.StructuredAssertionClient method) (bvbrc.SubsystemClient method) (bvbrc.SubsystemRefClient method) (bvbrc.SurveillanceClient method) (bvbrc.TaxonomyClient method) season (bvbrc.GenomeClient attribute) (bvbrc.StrainClient attribute) segment (bvbrc.GenomeClient attribute) (bvbrc.GenomeSequenceClient attribute) (bvbrc.SequenceFeatureClient attribute) segment_count (bvbrc.StrainClient attribute) segments (bvbrc.GenomeClient attribute) (bvbrc.GenomeFeatureClient attribute) (bvbrc.ProteinFeatureClient attribute) (bvbrc.SequenceFeatureClient attribute) select() (bvbrc.RQL.RQLQuery method) selection_criteria (bvbrc.MiscNiaidSgcClient attribute) sequence (bvbrc.FeatureSequenceClient attribute) (bvbrc.GenomeSequenceClient attribute) (bvbrc.ProteinFeatureClient attribute) (bvbrc.ProteinStructureClient attribute) sequence_accession (bvbrc.SurveillanceClient attribute) sequence_features (bvbrc.SpikeLineageClient attribute) (bvbrc.SpikeVariantClient attribute) sequence_id (bvbrc.GenomeFeatureClient attribute) (bvbrc.GenomeSequenceClient attribute) (bvbrc.PathwayClient attribute) sequence_md5 (bvbrc.GenomeSequenceClient attribute) (bvbrc.ProteinStructureClient attribute) sequence_status (bvbrc.GenomeSequenceClient attribute) sequence_type (bvbrc.FeatureSequenceClient attribute) (bvbrc.GenomeSequenceClient attribute) SequenceFeatureClient (class in bvbrc) SequenceFeatureVtClient (class in bvbrc) sequencing_centers (bvbrc.GenomeClient attribute) sequencing_depth (bvbrc.GenomeClient attribute) sequencing_platform (bvbrc.GenomeClient attribute) sequencing_status (bvbrc.GenomeClient attribute) SerologyClient (class in bvbrc) serotype (bvbrc.SerologyClient attribute) serovar (bvbrc.GenomeClient attribute) sf_category (bvbrc.SequenceFeatureClient attribute) (bvbrc.SequenceFeatureVtClient attribute) sf_id (bvbrc.SequenceFeatureClient attribute) (bvbrc.SequenceFeatureVtClient attribute) sf_name (bvbrc.SequenceFeatureClient attribute) (bvbrc.SequenceFeatureVtClient attribute) sf_sequence (bvbrc.SequenceFeatureClient attribute) (bvbrc.SequenceFeatureVtClient attribute) sf_sequence_md5 (bvbrc.SequenceFeatureClient attribute) (bvbrc.SequenceFeatureVtClient attribute) sfvt_genome_count (bvbrc.SequenceFeatureVtClient attribute) sfvt_genome_ids (bvbrc.SequenceFeatureVtClient attribute) sfvt_id (bvbrc.SequenceFeatureVtClient attribute) sfvt_sequence (bvbrc.SequenceFeatureVtClient attribute) sfvt_sequence_md5 (bvbrc.SequenceFeatureVtClient attribute) sfvt_variations (bvbrc.SequenceFeatureVtClient attribute) sog_id (bvbrc.GenomeFeatureClient attribute) SOLR_JSON (bvbrc.ReturnFormat attribute) sort() (bvbrc.RQL.RQLQuery method) source (bvbrc.GenomeAmrClient attribute) (bvbrc.ProteinFeatureClient attribute) (bvbrc.SequenceFeatureClient attribute) (bvbrc.SpGeneClient attribute) (bvbrc.SpGeneRefClient attribute) (bvbrc.StructuredAssertionClient attribute)

source_aa_sequence (bvbrc.SequenceFeatureClient attribute) source_db (bvbrc.PPIClient attribute) source_id (bvbrc.PPIClient attribute) (bvbrc.ProteinFeatureClient attribute) (bvbrc.SequenceFeatureClient attribute) (bvbrc.SpGeneClient attribute) (bvbrc.SpGeneRefClient attribute) source_of_vaccine_information (bvbrc.SurveillanceClient attribute) source_sf_location (bvbrc.SequenceFeatureClient attribute) source_strain (bvbrc.SequenceFeatureClient attribute) species (bvbrc.GenomeClient attribute) (bvbrc.MiscNiaidSgcClient attribute) (bvbrc.SpGeneRefClient attribute) (bvbrc.StrainClient attribute) (bvbrc.SurveillanceClient attribute) SpGeneClient (class in bvbrc) SpGeneRefClient (class in bvbrc) SpikeLineageClient (class in bvbrc) SpikeVariantClient (class in bvbrc) sporulation (bvbrc.GenomeClient attribute) sra_accession (bvbrc.GenomeClient attribute) start (bvbrc.EpitopeAssayClient attribute) (bvbrc.EpitopeClient attribute) (bvbrc.GenomeFeatureClient attribute) (bvbrc.ProteinFeatureClient attribute) (bvbrc.SequenceFeatureClient attribute) state_province (bvbrc.GenomeClient attribute) status (bvbrc.StrainClient attribute) status_code (bvbrc.BVBRCResponse attribute) strain (bvbrc.BiosetClient attribute) (bvbrc.BiosetResultClient attribute) (bvbrc.ExperimentClient attribute) (bvbrc.GenomeClient attribute) (bvbrc.MiscNiaidSgcClient attribute) (bvbrc.SerologyClient attribute) (bvbrc.StrainClient attribute) (bvbrc.SurveillanceClient attribute) StrainClient (class in bvbrc) strand (bvbrc.GenomeFeatureClient attribute) StructuredAssertionClient (class in bvbrc) study_description (bvbrc.BiosetClient attribute) (bvbrc.ExperimentClient attribute) study_institution (bvbrc.BiosetClient attribute) (bvbrc.ExperimentClient attribute) study_name (bvbrc.BiosetClient attribute) (bvbrc.ExperimentClient attribute) study_pi (bvbrc.BiosetClient attribute) (bvbrc.ExperimentClient attribute) study_title (bvbrc.BiosetClient attribute) (bvbrc.ExperimentClient attribute) subclade (bvbrc.GenomeClient attribute) subclass (bvbrc.SubsystemClient attribute) (bvbrc.SubsystemRefClient attribute) subject_coverage (bvbrc.SpGeneClient attribute) submission_date (bvbrc.SurveillanceClient attribute) submit_query() (bvbrc.AntibioticsClient method) (bvbrc.BiosetClient method) (bvbrc.BiosetResultClient method) (bvbrc.Client method) (bvbrc.EnzymeClassRefClient method) (bvbrc.EpitopeAssayClient method) (bvbrc.EpitopeClient method) (bvbrc.ExperimentClient method) (bvbrc.FeatureSequenceClient method) (bvbrc.GeneOntologyRefClient method) (bvbrc.GenomeAmrClient method) (bvbrc.GenomeClient method) (bvbrc.GenomeFeatureClient method) (bvbrc.GenomeSequenceClient method) (bvbrc.IdRefClient method) (bvbrc.MiscNiaidSgcClient method) (bvbrc.PathwayClient method) (bvbrc.PathwayRefClient method) (bvbrc.PPIClient method) (bvbrc.ProteinFamilyRefClient method) (bvbrc.ProteinFeatureClient method) (bvbrc.ProteinStructureClient method) (bvbrc.SequenceFeatureClient method) (bvbrc.SequenceFeatureVtClient method) (bvbrc.SerologyClient method) (bvbrc.SpGeneClient method) (bvbrc.SpGeneRefClient method) (bvbrc.SpikeLineageClient method) (bvbrc.SpikeVariantClient method) (bvbrc.StrainClient method) (bvbrc.StructuredAssertionClient method) (bvbrc.SubsystemClient method) (bvbrc.SubsystemRefClient method) (bvbrc.SurveillanceClient method) (bvbrc.TaxonomyClient method) subsystem_id (bvbrc.SubsystemClient attribute) (bvbrc.SubsystemRefClient attribute) subsystem_name (bvbrc.SubsystemClient attribute) (bvbrc.SubsystemRefClient attribute) SubsystemClient (class in bvbrc) SubsystemRefClient (class in bvbrc) subtype (bvbrc.GenomeClient attribute) (bvbrc.SequenceFeatureClient attribute) (bvbrc.StrainClient attribute) (bvbrc.SurveillanceClient attribute) sudden_onset (bvbrc.SurveillanceClient attribute) superclass (bvbrc.SubsystemClient attribute) (bvbrc.SubsystemRefClient attribute) superkingdom (bvbrc.GenomeClient attribute) SurveillanceClient (class in bvbrc) symptoms (bvbrc.SurveillanceClient attribute) synonyms (bvbrc.AntibioticsClient attribute)

T

target_id (bvbrc.MiscNiaidSgcClient attribute) target_status (bvbrc.MiscNiaidSgcClient attribute) taxon_id (bvbrc.BiosetClient attribute) (bvbrc.BiosetResultClient attribute) (bvbrc.EpitopeAssayClient attribute) (bvbrc.EpitopeClient attribute) (bvbrc.ExperimentClient attribute) (bvbrc.GenomeAmrClient attribute) (bvbrc.GenomeClient attribute) (bvbrc.GenomeFeatureClient attribute) (bvbrc.GenomeSequenceClient attribute) (bvbrc.PathwayClient attribute) (bvbrc.ProteinFeatureClient attribute) (bvbrc.ProteinStructureClient attribute) (bvbrc.SequenceFeatureClient attribute) (bvbrc.SpGeneClient attribute) (bvbrc.StrainClient attribute) (bvbrc.SubsystemClient attribute) (bvbrc.TaxonomyClient attribute) taxon_id_a (bvbrc.PPIClient attribute) taxon_id_b (bvbrc.PPIClient attribute) taxon_id_i (bvbrc.TaxonomyClient attribute) taxon_lineage_ids (bvbrc.BiosetClient attribute) (bvbrc.EpitopeAssayClient attribute) (bvbrc.EpitopeClient attribute) (bvbrc.ExperimentClient attribute) (bvbrc.GenomeClient attribute) (bvbrc.ProteinStructureClient attribute) (bvbrc.SerologyClient attribute) (bvbrc.StrainClient attribute) (bvbrc.SurveillanceClient attribute) taxon_lineage_names (bvbrc.EpitopeAssayClient attribute) (bvbrc.EpitopeClient attribute) (bvbrc.GenomeClient attribute) (bvbrc.ProteinStructureClient attribute) (bvbrc.StrainClient attribute) taxon_name (bvbrc.TaxonomyClient attribute) taxon_rank (bvbrc.TaxonomyClient attribute) TaxonomyClient (class in bvbrc) tcell_assays (bvbrc.EpitopeClient attribute)

temperature_range (bvbrc.GenomeClient attribute) test_antigen (bvbrc.SerologyClient attribute) test_interpretation (bvbrc.SerologyClient attribute) test_pathogen (bvbrc.SerologyClient attribute) test_result (bvbrc.SerologyClient attribute) test_type (bvbrc.SerologyClient attribute) testing_standard (bvbrc.GenomeAmrClient attribute) testing_standard_year (bvbrc.GenomeAmrClient attribute) text (bvbrc.BVBRCResponse property) title (bvbrc.EpitopeAssayClient attribute) (bvbrc.ProteinStructureClient attribute) to_pandas() (bvbrc.BVBRCResponse method) to_polars() (bvbrc.BVBRCResponse method) tobacco_use (bvbrc.SurveillanceClient attribute) topology (bvbrc.GenomeSequenceClient attribute) total_assays (bvbrc.EpitopeClient attribute) total_isolates (bvbrc.SpikeLineageClient attribute) (bvbrc.SpikeVariantClient attribute) tpm (bvbrc.BiosetResultClient attribute) travel_history (bvbrc.SurveillanceClient attribute) treatment (bvbrc.SurveillanceClient attribute) treatment_amount (bvbrc.BiosetClient attribute) (bvbrc.BiosetResultClient attribute) (bvbrc.ExperimentClient attribute) treatment_dosage (bvbrc.SurveillanceClient attribute) treatment_duration (bvbrc.BiosetClient attribute) (bvbrc.BiosetResultClient attribute) (bvbrc.ExperimentClient attribute) treatment_name (bvbrc.BiosetClient attribute) (bvbrc.BiosetResultClient attribute) (bvbrc.ExperimentClient attribute) treatment_type (bvbrc.BiosetClient attribute) (bvbrc.BiosetResultClient attribute) (bvbrc.ExperimentClient attribute) (bvbrc.SurveillanceClient attribute) trimester_of_pregnancy (bvbrc.SurveillanceClient attribute) trna (bvbrc.GenomeClient attribute) TSV (bvbrc.ReturnFormat attribute) type_strain (bvbrc.GenomeClient attribute) types_of_allergies (bvbrc.SurveillanceClient attribute)

U

uniprot_id (bvbrc.BiosetResultClient attribute) uniprotkb_accession (bvbrc.GenomeFeatureClient attribute) (bvbrc.IdRefClient attribute) (bvbrc.ProteinStructureClient attribute) url (bvbrc.BVBRCResponse attribute) use_of_personal_protective_equipment (bvbrc.SurveillanceClient attribute) user_read (bvbrc.GenomeAmrClient attribute) (bvbrc.GenomeClient attribute) (bvbrc.GenomeFeatureClient attribute) (bvbrc.GenomeSequenceClient attribute) (bvbrc.PathwayClient attribute) (bvbrc.SpGeneClient attribute) (bvbrc.StrainClient attribute) (bvbrc.StructuredAssertionClient attribute) (bvbrc.SubsystemClient attribute)

user_write (bvbrc.GenomeAmrClient attribute) (bvbrc.GenomeClient attribute) (bvbrc.GenomeFeatureClient attribute) (bvbrc.GenomeSequenceClient attribute) (bvbrc.PathwayClient attribute) (bvbrc.SpGeneClient attribute) (bvbrc.StrainClient attribute) (bvbrc.StructuredAssertionClient attribute) (bvbrc.SubsystemClient attribute)

V

vaccination_type (bvbrc.SurveillanceClient attribute) vaccine_dosage (bvbrc.SurveillanceClient attribute) vaccine_lot_number (bvbrc.SurveillanceClient attribute) vaccine_manufacturer (bvbrc.SurveillanceClient attribute) value (bvbrc.StructuredAssertionClient attribute)

variant_types (bvbrc.SequenceFeatureClient attribute) vendor (bvbrc.GenomeAmrClient attribute) ventilation (bvbrc.SurveillanceClient attribute) version (bvbrc.GenomeSequenceClient attribute) virus_identifier (bvbrc.SerologyClient attribute)

W

write_file() (bvbrc.BVBRCResponse method)

Z

z_score (bvbrc.BiosetResultClient attribute)